- Fixed some circular includes

- Documentation
 - File Declaration, TODO: Implementation

doxy/Doxyfile.in

@@ -943,8 +943,8 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = "@PROJECT_SOURCE_DIR@/include/" \
-                         "@PROJECT_SOURCE_DIR@/source/"  \
+INPUT                  = "@PROJECT_SOURCE_DIR@/include" \
+                         "@PROJECT_SOURCE_DIR@/source"  \
                          "@PROJECT_SOURCE_DIR@/README.md"
 
 # This tag can be used to specify the character encoding of the source files
@@ -1079,7 +1079,7 @@ EXCLUDE_SYMBOLS        =
 # that contain example code fragments that are included (see the \include
 # command).
 
-EXAMPLE_PATH           = "@PROJECT_SOURCE_DIR@"
+EXAMPLE_PATH           = "@PROJECT_SOURCE_DIR@/examples"
 
 # If the value of the EXAMPLE_PATH tag contains directories, you can use the
 # EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp and